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ydjI L-glycero-L-galacto-octuluronate-1-phosphate aldolase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946291, updated on 17-Dec-2024

Summary

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Official Symbol
ydjI
Official Full Name
L-glycero-L-galacto-octuluronate-1-phosphate aldolase
Primary source
ECOCYC:G6960
Locus tag
b1773
See related
ASAP:ABE-0005906
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1771
Summary
kbaY, gatY, fbaA and ydjI are paralogs. [More information is available at EcoGene: EG13485].
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Genomic context

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Sequence:
NC_000913.3 (1856933..1857769, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene NADH-dependent methylglyoxal reductase Neighboring gene L-glycero-L-galacto-octuluronate kinase Neighboring gene putative zinc-binding dehydrogenase YdjJ Neighboring gene putative transporter YdjK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and Functional Characterization of YdjI, an Aldolase of Unknown Specificity in Escherichia coli K12. Huddleston JP, et al. Biochemistry, 2019 Aug 6. PMID 31322866, Free PMC Article
  2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables aldehyde-lyase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables aldehyde-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables tagatose-bisphosphate aldolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein homotetramerization IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
L-glycero-L-galacto-octuluronate-1-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1856933..1857769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416287.1 L-glycero-L-galacto-octuluronate-1-phosphate aldolase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416287.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A444R9C1, A0A779ULR8
    Conserved Domains (1) summary
    cl21457
    Location:1 → 277
    TIM; TIM-like beta/alpha barrel domains
Nucleotide Protein
Heading Accession and Version

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