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yafD endonuclease/exonuclease/phosphatase domain-containing protein YafD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946286, updated on 20-Feb-2025

Summary

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Official Symbol
yafD
Official Full Name
endonuclease/exonuclease/phosphatase domain-containing protein YafD
Primary source
ECOCYC:EG11650
Locus tag
b0209
See related
ASAP:ABE-0000700
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0209
Summary
YafD has similarity to Escherichia coli YadD, which is encoded within the panBCD gene cluster . [More information is available at EcoCyc: EG11650].
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Genomic context

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Sequence:
NC_000913.3 (231122..231922)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Asp Neighboring gene methylglyoxal reductase DkgB Neighboring gene DNA-binding transcriptional regulator YafC Neighboring gene putative S-adenosylmethionine-dependent methyltransferase Neighboring gene membrane-bound lytic murein transglycosylase D

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and sequence of the Escherichia coli panBCD gene cluster. Merkel WK, et al. FEMS Microbiol Lett, 1996 Oct 1. PMID 8837478
  2. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article
  3. Molecular cloning and DNA sequence of dniR, a gene affecting anaerobic expression of the Escherichia coli hexaheme nitrite reductase. Kajie S, et al. FEMS Microbiol Lett, 1991 Oct 1. PMID 1663890
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
endonuclease/exonuclease/phosphatase domain-containing protein YafD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    231122..231922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414745.1 endonuclease/exonuclease/phosphatase domain-containing protein YafD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414745.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376ZM76, A0AAQ1T9B3, A0AB33HSS0
    Conserved Domains (1) summary
    PRK05421
    Location:1 → 263
    PRK05421; endonuclease/exonuclease/phosphatase family protein
Nucleotide Protein
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