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cspI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946099, updated on 11-Sep-2024

Summary

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Official Symbol
cspI
Primary source
ECOCYC:G6825
Locus tag
b1552
See related
ASAP:ABE-0005183
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
cspJ; ECK1546
Summary
CspI is a cold shock protein with complex regulation. [More information is available at EcoCyc: G6825].
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Genomic context

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Sequence:
NC_000913.3 (1638455..1638667, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YnfR Neighboring gene protein YnfQ Neighboring gene DUF2514 domain-containing protein RzpQ Neighboring gene putative lipoprotein RzoQ Neighboring gene putative lysozyme Neighboring gene protein YdfR

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CspI, the ninth member of the CspA family of Escherichia coli, is induced upon cold shock. Wang N, et al. J Bacteriol, 1999 Mar. PMID 10049393, Free PMC Article
  2. Applications of nucleic acid chaperone activity of CspA and its homologues. Phadtare S, et al. J Mol Microbiol Biotechnol, 2009. PMID 19556744
  3. Cold shock proteins aid coupling of transcription and translation in bacteria. El-Sharoud WM, et al. Sci Prog, 2007. PMID 17455763, Free PMC Article
  4. Folding chromosomes in bacteria: examining the role of Csp proteins and other small nucleic acid-binding proteins. Trun N, et al. Curr Top Dev Biol, 2003. PMID 12959196
  5. Changes in Escherichia coli transcriptome during acclimatization at low temperature. Polissi A, et al. Res Microbiol, 2003 Oct. PMID 14527658

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within response to cold IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cold shock-like protein CspI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1638455..1638667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416070.1 cold shock-like protein CspI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416070.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7I6H5L0
    Conserved Domains (1) summary
    cl09927
    Location:1 → 70
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Nucleotide Protein
Heading Accession and Version

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