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rspR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946087, updated on 11-Sep-2024

Summary

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Official Symbol
rspR
Primary source
ECOCYC:G6814
Locus tag
b1540
See related
ASAP:ABE-0005144
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1533; ydfH
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Genomic context

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Sequence:
NC_000913.3 (1628352..1629038)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidyl-dipeptidase Dcp Neighboring gene 3-hydroxy acid dehydrogenase YdfG Neighboring gene putative selenoprotein YdfZ Neighboring gene putative oxidoreductase YdfI

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. YdfH identified as a repressor of rspA by the use of reduced genome Escherichia coli MGF-01. Sakihama Y, et al. Biosci Biotechnol Biochem, 2012. PMID 22972332
  2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  3. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
  4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  5. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Lu P, et al. Nat Biotechnol, 2007 Jan. PMID 17187058

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional repressor RspR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1628352..1629038
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416058.1 DNA-binding transcriptional repressor RspR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416058.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A418GRE3, A0A7D7KG19, A0A8S7B6C9
    Conserved Domains (1) summary
    COG1802
    Location:1 → 226
    GntR; DNA-binding transcriptional regulator, GntR family [Transcription]
Nucleotide Protein
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