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ydeI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946068, updated on 11-Sep-2024

Summary

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Official Symbol
ydeI
Primary source
ECOCYC:EG11644
Locus tag
b1536
See related
ASAP:ABE-0005127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1529
Summary
First 19 aa are predicted to be a type I signal peptide. ydeI and ygiW are paralogs. [More information is available at EcoGene: EG11644].
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Genomic context

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Sequence:
NC_000913.3 (1624105..1624497, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein MgtT Neighboring gene ncRNA Neighboring gene diguanylate cyclase DgcZ Neighboring gene PF02464 family protein YdeJ Neighboring gene peptidyl-dipeptidase Dcp

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli. Cohen SP, et al. J Bacteriol, 1993 Mar. PMID 8383113, Free PMC Article
  2. Climbing the protein ladder. Dovichi NJ. Nat Biotechnol, 2004 Oct. PMID 15470461
  3. Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis. Zhong H, et al. Nat Biotechnol, 2004 Oct. PMID 15361881
  4. BOF: a novel family of bacterial OB-fold proteins. Ginalski K, et al. FEBS Lett, 2004 Jun 4. PMID 15178340
  5. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hydrogen peroxide IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within single-species biofilm formation on inanimate substrate IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
BOF family protein YdeI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1624105..1624497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416054.1 BOF family protein YdeI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416054.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A793CC42
    Conserved Domains (1) summary
    PRK10053
    Location:1 → 130
    PRK10053; YdeI family stress tolerance OB fold protein
Nucleotide Protein
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Gene LinkOut

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