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ddpB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946044, updated on 11-Sep-2024

Summary

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Official Symbol
ddpB
Primary source
ECOCYC:G6780
Locus tag
b1486
See related
ASAP:ABE-0004955
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1480; yddR
Summary
RpoS regulon. [More information is available at EcoGene: EG13789]. YddR is a membrane component of a predicted peptide ABC transporter. [More information is available at EcoCyc: G6780].
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Genomic context

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Sequence:
NC_000913.3 (1559907..1560929, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene osmotically inducible peroxiredoxin OsmC Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD Neighboring gene putative D,D-dipeptide ABC transporter membrane subunit DdpC Neighboring gene putative D,D-dipeptide ABC transporter periplasmic binding protein Neighboring gene D-alanyl-D-alanine dipeptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VanX, a bacterial D-alanyl-D-alanine dipeptidase: resistance, immunity, or survival function? Lessard IA, et al. Proc Natl Acad Sci U S A, 1999 Sep 28. PMID 10500118, Free PMC Article
  2. Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function. Lessard IA, et al. Chem Biol, 1998 Sep. PMID 9751644
  3. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
  4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables dipeptide transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in dipeptide transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in dipeptide transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
putative D,D-dipeptide ABC transporter membrane subunit DdpB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1559907..1560929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416003.1 putative D,D-dipeptide ABC transporter membrane subunit DdpB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416003.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376S834
    Conserved Domains (1) summary
    COG0601
    Location:4 → 338
    DppB; ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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