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yncE PQQ-like domain-containing protein YncE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946006, updated on 3-Dec-2024

Summary

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Official Symbol
yncE
Official Full Name
PQQ-like domain-containing protein YncE
Primary source
ECOCYC:G6763
Locus tag
b1452
See related
ASAP:ABE-0004843
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1446
Summary
First 30 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13775]. YncE is a hypothetical protein. [More information is available at EcoCyc: G6763].
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Genomic context

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Sequence:
NC_000913.3 (1523307..1524368)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator McbR Neighboring gene putative TonB-dependent outer membrane receptor Neighboring gene L-asparagine transporter Neighboring gene putative glutathione S-transferase YncG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overproduction, purification and preliminary X-ray diffraction analysis of YncE, an iron-regulated Sec-dependent periplasmic protein from Escherichia coli. Baba-Dikwa A, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2008 Oct 1. PMID 18931447, Free PMC Article
  2. Defining the role of the Escherichia coli chaperone SecB using comparative proteomics. Baars L, et al. J Biol Chem, 2006 Apr 14. PMID 16352602
  3. Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. McHugh JP, et al. J Biol Chem, 2003 Aug 8. PMID 12746439
  4. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in outer membrane-bounded periplasmic space IGI
Inferred from Genetic Interaction
more info
 PubMed 

General protein information

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Preferred Names
PQQ-like domain-containing protein YncE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1523307..1524368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415969.1 PQQ-like domain-containing protein YncE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415969.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AIZ4
    Conserved Domains (1) summary
    COG3391
    Location:34 → 333
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
Nucleotide Protein
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