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ydcS putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946005, updated on 19-Sep-2024

Summary

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Official Symbol
ydcS
Official Full Name
putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase
Primary source
ECOCYC:G6751
Locus tag
b1440
See related
ASAP:ABE-0004803
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1434
Summary
YdcS was purified and characterized as a PHB synthase, however most PHB remains so there must be another synthase(s) (Dai, 2008). [More information is available at EcoGene: EG13762]. YdcS is a periplasmic binding protein of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6751].
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Genomic context

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Sequence:
NC_000913.3 (1511654..1512799)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene antitoxin of the HicA-HicB toxin-antitoxin system/ DNA-binding transcriptional repressor HicB Neighboring gene fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR Neighboring gene putative ABC transporter ATP-binding protein YdcT Neighboring gene putative ABC transporter membrane subunit YdcU Neighboring gene putative ABC transporter membrane subunit YdcV

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-conductance mode of a poly-3-hydroxybutyrate/calcium/polyphosphate channel isolated from competent Escherichia coli cells. Pavlov E, et al. FEBS Lett, 2005 Sep 26. PMID 16150446
  2. Polyhydroxybutyrate-enhanced transformation of log-phase Escherichia coli. Addison CJ, et al. Biotechniques, 2004 Sep. PMID 15470891
  3. Differential effects of temperature on E. coli and synthetic polyhydroxybutyrate/polyphosphate channels. Das S, et al. Biochemistry, 2002 Apr 23. PMID 11955081
  4. pH regulates cation selectivity of poly-(R)-3-hydroxybutyrate/polyphosphate channels from E. coli in planar lipid bilayers. Das S, et al. Biochemistry, 2001 Feb 20. PMID 11329275
  5. Transmembrane ion transport by polyphosphate/poly-(R)-3-hydroxybutyrate complexes. Reusch RN. Biochemistry (Mosc), 2000 Mar. PMID 10739470

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. dsDNA transfers across the two membranes through different routes in natural and artificial transformation of E. coli.
    Title: Two different routes for double-stranded DNA transfer in natural and artificial transformation of Escherichia coli.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables polyamine binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA import into cell involved in transformation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within poly-hydroxybutyrate biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in poly-hydroxybutyrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within poly-hydroxybutyrate biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in polyamine transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1511654..1512799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415957.1 putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415957.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7D7KG89
    Conserved Domains (1) summary
    cd13588
    Location:36 → 330
    PBP2_polyamine_1; The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold
Nucleotide Protein
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