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ydeM putative anaerobic sulfatase maturation enzyme YdeM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945981, updated on 30-Jul-2025
Official Symbol
ydeM
Official Full Name
putative anaerobic sulfatase maturation enzyme YdeM
Primary source
ECOCYC:G6787
Locus tag
b1497
See related
ASAP:ABE-0004986
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1491
Summary
YdeM is a member of the anaerobic sulfatase maturation enzyme subfamily of the Radical SAM superfamily of enzymes . [More information is available at EcoCyc: G6787].
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Sequence:
NC_000913.3 (1579633..1580790, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative TonB-dependent receptor YddB Neighboring gene ABC transporter family protein YddA Neighboring gene protein YneP Neighboring gene putative sulfatase YdeN Neighboring gene DNA-binding transcriptional dual regulator YdeO

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A novel mucin-sulphatase activity found in Burkholderia cepacia and Pseudomonas aeruginosa. Jansen HJ, et al. J Med Microbiol, 1999 Jun. PMID 10359304
  2. Sulfatases: structure, mechanism, biological activity, inhibition, and synthetic utility. Hanson SR, et al. Angew Chem Int Ed Engl, 2004 Nov 5. PMID 15493058
  3. First evidences for a third sulfatase maturation system in prokaryotes from E. coli aslB and ydeM deletion mutants. Benjdia A, et al. FEBS Lett, 2007 Mar 6. PMID 17303125
  4. Computational analysis of bacterial sulfatases and their modifying enzymes. Schirmer A, et al. Chem Biol, 1998 Aug. PMID 9710560
  5. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cys-type sulfatases can mature only in aerobic conditions, and knocking-out of aslB, ydeM and yidF does not impair Cys-type sulfatase maturation.
    Title: First evidences for a third sulfatase maturation system in prokaryotes from E. coli aslB and ydeM deletion mutants.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within protein maturation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Preferred Names
putative anaerobic sulfatase maturation enzyme YdeM

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1579633..1580790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416014.4 putative anaerobic sulfatase maturation enzyme YdeM

    See identical proteins and their annotated locations for NP_416014.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8T5ZAB5
    Conserved Domains (1) summary
    TIGR03942
    Location:2 → 365
    sulfatase_rSAM; anaerobic sulfatase-maturating enzyme
Nucleotide Protein
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