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ynbC hydrolase/methyltransferase domain-containing protein YnbC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945970, updated on 3-Dec-2024

Summary

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Official Symbol
ynbC
Official Full Name
hydrolase/methyltransferase domain-containing protein YnbC
Primary source
ECOCYC:G6729
Locus tag
b1410
See related
ASAP:ABE-0004708
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1403
Summary
Overexpression causes filamentous biofilm formation and non-motility. [More information is available at EcoGene: EG13750].
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Genomic context

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Sequence:
NC_000913.3 (1479138..1480895)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF2773 domain-containing protein YdbD Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene putative CDP-diglyceride synthase Neighboring gene phosphatase domain-containing protein YnbD Neighboring gene FMN dependent NADH:quinone oxidoreductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12. Moszer I, et al. Biochimie, 1991 Nov. PMID 1665988
  2. Cloning and characterization of the hrpA gene in the terC region of Escherichia coli that is highly similar to the DEAH family RNA helicase genes of Saccharomyces cerevisiae. Moriya H, et al. Nucleic Acids Res, 1995 Feb 25. PMID 7899078, Free PMC Article
  3. Group II intron protein localization and insertion sites are affected by polyphosphate. Zhao J, et al. PLoS Biol, 2008 Jun 24. PMID 18593213, Free PMC Article
  4. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
  5. Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. Hu P, et al. PLoS Biol, 2009 Apr 28. PMID 19402753, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables lipase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
hydrolase/methyltransferase domain-containing protein YnbC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1479138..1480895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415928.1 hydrolase/methyltransferase domain-containing protein YnbC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415928.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376Y8P5
    Conserved Domains (2) summary
    pfam12146
    Location:32 → 265
    Hydrolase_4; Serine aminopeptidase, S33
    pfam12147
    Location:275 → 582
    Methyltransf_20; Putative methyltransferase
Nucleotide Protein
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