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rzpD putative prophage endopeptidase RzpD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945929, updated on 10-Feb-2026
Official Symbol
rzpD
Official Full Name
putative prophage endopeptidase RzpD
Primary source
ECOCYC:G6311
Locus tag
b0556
See related
ASAP:ABE-0001900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0547; ybcT
Summary
Overexpression causes abnormal biofilm architecture. [More information is available at EcoGene: EG13636].
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Sequence:
NC_000913.3 (578107..578568)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene IS5 transposase and trans-activator Neighboring gene putative phage lysis protein Neighboring gene lysozyme Neighboring gene putative prophage lysis lipoprotein RzoD Neighboring gene prophage lipoprotein BorD Neighboring gene DUF1398 domain-containing protein YbcV

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Bacteriophage lambda lysis gene product modified and inserted into Escherichia coli outer membrane: Rz1 lipoprotein. Taylor A, et al. Microb Drug Resist, 1996 Spring. PMID 9158738
  2. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
  3. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
  4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  5. Rz/Rz1 lysis gene equivalents in phages of Gram-negative hosts. Summer EJ, et al. J Mol Biol, 2007 Nov 9. PMID 17900620

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
  
involved_in killing of cells of another organism IEA
Inferred from Electronic Annotation
more info
  
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
involved_in viral release from host cell by cytolysis IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
putative prophage endopeptidase RzpD

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    578107..578568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415088.1 putative prophage endopeptidase RzpD

    See identical proteins and their annotated locations for NP_415088.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0AAX2T6T5
    Conserved Domains (1) summary
    pfam03245
    Location:29 → 153
    Phage_lysis; Bacteriophage Rz lysis protein
Nucleotide Protein
Heading Accession and Version

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