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ydeO DNA-binding transcriptional dual regulator YdeO [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945922, updated on 3-Dec-2024

Summary

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Official Symbol
ydeO
Official Full Name
DNA-binding transcriptional dual regulator YdeO
Primary source
ECOCYC:G6789
Locus tag
b1499
See related
ASAP:ABE-0004992
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1493
Summary
EvgAS regulon. [More information is available at EcoGene: EG13797]. YdeO activates genes involved in the cellular response to acid resistance . [More information is available at EcoCyc: G6789].
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Genomic context

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Sequence:
NC_000913.3 (1582926..1583687, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YneP Neighboring gene putative anaerobic sulfatase maturation enzyme YdeM Neighboring gene putative sulfatase YdeN Neighboring gene two-component system connector SafA Neighboring gene putative oxidoreductase YdeP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the YdeO regulon in Escherichia coli. Yamanaka Y, et al. PLoS One, 2014. PMID 25375160, Free PMC Article
  2. Role of the AraC-XylS family regulator YdeO in multi-drug resistance of Escherichia coli. Nishino K, et al. J Antibiot (Tokyo), 2009 May. PMID 19329985
  3. Characterization of enteropathogenic Escherichia coli mutants that fail to disrupt host cell spreading and attachment to substratum. Nadler C, et al. Infect Immun, 2006 Feb. PMID 16428726, Free PMC Article
  4. Characterization of EvgAS-YdeO-GadE branched regulatory circuit governing glutamate-dependent acid resistance in Escherichia coli. Ma Z, et al. J Bacteriol, 2004 Nov. PMID 15489450, Free PMC Article
  5. Molecular mechanism of transcriptional cascade initiated by the EvgS/EvgA system in Escherichia coli K-12. Itou J, et al. Biosci Biotechnol Biochem, 2009 Apr 23. PMID 19352034

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within DNA-templated transcription IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional dual regulator YdeO

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1582926..1583687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416016.1 DNA-binding transcriptional dual regulator YdeO [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416016.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8NFN8
    Conserved Domains (1) summary
    PRK09940
    Location:1 → 253
    PRK09940; transcriptional regulator YdeO; Provisional
Nucleotide Protein
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