U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yciT DNA-binding transcriptional dual regulator YciT [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945869, updated on 19-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
yciT
Official Full Name
DNA-binding transcriptional dual regulator YciT
Primary source
ECOCYC:G6638
Locus tag
b1284
See related
ASAP:ABE-0004312
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
deoT; ECK1279
Summary
AFMB Structural Genomics target Number 52 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13905]. DeoT belongs to the DeoR family of transcriptional regulators and acts as a global regulator . [More information is available at EcoCyc: G6638].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (1343597..1344346, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene orotidine-5'-phosphate decarboxylase Neighboring gene putative translation factor Neighboring gene osmotically-inducible lipoprotein OsmB Neighboring gene UPF0509 family protein YciZ Neighboring gene protein YmiD Neighboring gene cyclic di-GMP phosphodiesterase PdeR

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. DeoT, a DeoR-type transcriptional regulator of multiple target genes. Elgrably-Weiss M, et al. FEMS Microbiol Lett, 2006 Jan. PMID 16451192
  2. Genome-wide screening of genes affecting glycogen metabolism in Escherichia coli K-12. Eydallin G, et al. FEBS Lett, 2007 Jun 26. PMID 17543954
  3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  4. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
  5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-binding transcriptional dual regulator YciT

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1343597..1344346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415800.1 DNA-binding transcriptional dual regulator YciT [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415800.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6NX32
    Conserved Domains (1) summary
    COG1349
    Location:1 → 248
    GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.