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ynfH putative menaquinol dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945822, updated on 23-Nov-2023

Summary

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Gene symbol
ynfH
Gene description
putative menaquinol dehydrogenase
Primary source
ASAP:ABE-0005311
Locus tag
b1590
See related
ECOCYC:G6848
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1585
Summary
The physiological substrate and relevance of the YnfFGH S- and N-oxide reductase is unknown. [More information is available at EcoGene: EG13846]. YnfH contains eight potential transmembrane helices and is similar to DmsC, the membrane anchor subunit of the dimethyl sulfoxide reductase heterotrimer. [More information is available at EcoCyc: G6848].
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Genomic context

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Sequence:
NC_000913.3 (1663609..1664463)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative selenate reductase YnfF Neighboring gene putative oxidoreductase YnfG Neighboring gene redox enzyme maturation protein DmsD Neighboring gene putative chloride:H(+) antiporter ClcB Neighboring gene dethiobiotin synthetase BidA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Activation and repression at the Escherichia coli ynfEFGHI operon promoter. Xu M, et al. J Bacteriol, 2009 May. PMID 19251855, Free PMC Article
  2. The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC). Lubitz SP, et al. Arch Biochem Biophys, 2003 Oct 15. PMID 14522592
  3. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12. Guymer D, et al. Arch Microbiol, 2009 Jun. PMID 19415239
  4. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables dimethyl sulfoxide reductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anaerobic electron transport chain IEA
Inferred from Electronic Annotation
more info
  
involved_in anaerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in anaerobic respiration NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of dimethyl sulfoxide reductase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of oxidoreductase complex NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative menaquinol dehydrogenase
NP_416107.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1663609..1664463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416107.1 putative menaquinol dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416107.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8QRZ5, A0A8T6PJN6
    Conserved Domains (1) summary
    pfam04976
    Location:1 → 274
    DmsC; DMSO reductase anchor subunit (DmsC)
Nucleotide Protein
Heading Accession and Version

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