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hofC inner membrane protein HofC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945806, updated on 3-Dec-2024
Official Symbol
hofC
Official Full Name
inner membrane protein HofC
Primary source
ECOCYC:EG11798
Locus tag
b0106
See related
ASAP:ABE-0000366
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0105; hopC; yacD
Summary
hofC is a homolog of pilC from Pseudomonas aeruginosa which is involved in type-IV pilus assembly . [More information is available at EcoCyc: EG11798].
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Sequence:
NC_000913.3 (114522..115724, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YacM Neighboring gene GMP reductase Neighboring gene T2SSE family protein Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdD Neighboring gene quinolinate phosphoribosyltransferase (decarboxylating)

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Nucleotide sequence of the gene encoding the GMP reductase of Escherichia coli K12. Andrews SC, et al. Biochem J, 1988 Oct 1. PMID 2904262, Free PMC Article
  2. Chromosomal genes essential for stable maintenance of the mini-F plasmid in Escherichia coli. Niki H, et al. J Bacteriol, 1988 Nov. PMID 3053654, Free PMC Article
  3. PpdD type IV pilin of Escherichia coli K-12 can Be assembled into pili in Pseudomonas aeruginosa. Sauvonnet N, et al. J Bacteriol, 2000 Feb. PMID 10633126, Free PMC Article
  4. Escherichia coli contains a set of genes homologous to those involved in protein secretion, DNA uptake and the assembly of type-4 fimbriae in other bacteria. Whitchurch CB, et al. Gene, 1994 Dec 2. PMID 7959070
  5. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
  
involved_in protein secretion by the type II secretion system IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Preferred Names
inner membrane protein HofC

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    114522..115724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414648.1 inner membrane protein HofC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414648.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8NDX2
    Conserved Domains (1) summary
    PRK10573
    Location:1 → 397
    PRK10573; protein transport protein HofC
Nucleotide Protein
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