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ppdC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945797, updated on 11-Sep-2024

Summary

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Official Symbol
ppdC
Primary source
ECOCYC:EG11154
Locus tag
b2823
See related
ASAP:ABE-0009257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2819; ygdA
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Genomic context

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Sequence:
NC_000913.3 (2962441..2962764, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene exodeoxyribonuclease V subunit RecB Neighboring gene protease 3 Neighboring gene exodeoxyribonuclease V subunit RecC Neighboring gene DUF2509 domain-containing protein YgdB Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA Neighboring gene thymidylate synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes. Hobbs M, et al. Mol Microbiol, 1993 Oct. PMID 7934814
  2. Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region. Finch PW, et al. Nucleic Acids Res, 1986 Jun 11. PMID 3520484, Free PMC Article
  3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  4. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2962441..2962764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417300.1 prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417300.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3JDQ0
    Conserved Domains (1) summary
    PRK10332
    Location:1 → 107
    PRK10332; prepilin-type N-terminal cleavage/methylation domain-containing protein
Nucleotide Protein
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