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potD spermidine preferential ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945682, updated on 9-Mar-2022

Summary

Gene symbol
potD
Gene description
spermidine preferential ABC transporter periplasmic binding protein
Primary source
ASAP:ABE-0003789
Locus tag
b1123
See related
ECOCYC:EG10752
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1109
Summary
PotBCAD spermidine/putrescine ABC transport system. [More information is available at EcoGene: EG10752]. PotABCD is an ATP-dependent polyamine transporter that is a member of the ATP-Binding Cassette (ABC) Superfamily of transporters . [More information is available at EcoCyc: EG10752].
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Genomic context

Sequence:
NC_000913.3 (1181783..1182829, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene CobB-S;protein-lysine deacetylase/desuccinylase/lipoamidase Neighboring gene putative inner membrane protein YcfZ Neighboring gene putative inner membrane protein YmfA Neighboring gene spermidine preferential ABC transporter membrane subunit PotC Neighboring gene spermidine preferential ABC transporter membrane subunit PotB Neighboring gene spermidine preferential ABC transporter ATP binding subunit

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables polyamine binding IEA
Inferred from Electronic Annotation
more info
 
enables putrescine binding IDA
Inferred from Direct Assay
more info
PubMed 
enables spermidine binding IDA
Inferred from Direct Assay
more info
PubMed 
enables spermidine binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
PubMed 
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermidine preferential ABC transporter periplasmic binding protein
NP_415641.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1181783..1182829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415641.1 spermidine preferential ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415641.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0AFK9
    Conserved Domains (1) summary
    PRK09501
    Location:1348
    potD; spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed