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pspD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945635, updated on 24-Aug-2024

Summary

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Official Symbol
pspD
Primary source
ECOCYC:EG10779
Locus tag
b1307
See related
ASAP:ABE-0004394
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1302
Summary
PspD is a peripheral inner membrane protein . [More information is available at EcoCyc: EG10779].
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Genomic context

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Sequence:
NC_000913.3 (1369393..1369614)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene phage shock protein A Neighboring gene phage shock protein B Neighboring gene phage shock protein C Neighboring gene thiosulfate sulfurtransferase PspE Neighboring gene glucosylglycerate phosphorylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers. Waldminghaus T, et al. Mol Genet Genomics, 2007 Nov. PMID 17647020
  2. Secretion defects that activate the phage shock response of Escherichia coli. Jones SE, et al. J Bacteriol, 2003 Nov. PMID 14594846, Free PMC Article
  3. The psp locus of Yersinia enterocolitica is required for virulence and for growth in vitro when the Ysc type III secretion system is produced. Darwin AJ, et al. Mol Microbiol, 2001 Jan. PMID 11136463
  4. A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding protein. Dworkin J, et al. Genes Dev, 1998 Mar 15. PMID 9512522, Free PMC Article
  5. Role of an Escherichia coli stress-response operon in stationary-phase survival. Weiner L, et al. Proc Natl Acad Sci U S A, 1994 Mar 15. PMID 8134371, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within phage shock IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phage shock protein D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1369393..1369614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415823.1 phage shock protein D [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415823.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T5Y808
    Conserved Domains (1) summary
    PRK10497
    Location:1 → 73
    PRK10497; phage shock protein PspD
Nucleotide Protein
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