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ycdZ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945617, updated on 11-Sep-2024

Summary

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Official Symbol
ycdZ
Primary source
ECOCYC:G6542
Locus tag
b1036
See related
ASAP:ABE-0003514
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1022; nupT
Summary
YcdZ is an inner membrane protein with five predicted transmembrane domains. [More information is available at EcoCyc: G6542].
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Genomic context

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Sequence:
NC_000913.3 (1100296..1100787)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene zinc-binding phosphatase YcdX Neighboring gene chaperone protein YcdY Neighboring gene curli secretion channel Neighboring gene curli assembly component CsgF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  3. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
  4. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inner membrane protein YcdZ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1100296..1100787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415554.4 inner membrane protein YcdZ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415554.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A140NDI7, A0A376P3N7, B1LIX8, D8A1A2, W8SPF6
    Conserved Domains (1) summary
    pfam06496
    Location:10 → 142
    DUF1097; Protein of unknown function (DUF1097)
Nucleotide Protein
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