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rclR DNA-binding transcriptional activator RclR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945616, updated on 3-Dec-2024
Official Symbol
rclR
Official Full Name
DNA-binding transcriptional activator RclR
Primary source
ECOCYC:G6175
Locus tag
b0305
See related
ASAP:ABE-0001054
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0304; ykgD
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Sequence:
NC_000913.3 (320227..321081)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1471 domain-containing protein RclB Neighboring gene cupric reductase RclA Neighboring gene putative lactate utilization oxidoreductase YkgE Neighboring gene putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain Neighboring gene DUF162 domain-containing lactate utilization protein YkgG

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Induction of the reactive chlorine-responsive transcription factor RclR in Escherichia coli following ingestion by neutrophils. Königstorfer A, et al. Pathog Dis, 2021 Jan 9. PMID 33351093, Free PMC Article
  2. Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. Gurvich OL, et al. EMBO J, 2003 Nov 3. PMID 14592990, Free PMC Article
  3. The RclR protein is a reactive chlorine-specific transcription factor in Escherichia coli. Parker BW, et al. J Biol Chem, 2013 Nov 8. PMID 24078635, Free PMC Article
  4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Induction of the reactive chlorine-responsive transcription factor RclR in Escherichia coli following ingestion by neutrophils.
    Title: Induction of the reactive chlorine-responsive transcription factor RclR in Escherichia coli following ingestion by neutrophils.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of organohalogen metabolic process IEP
Inferred from Expression Pattern
more info
 PubMed 
Preferred Names
DNA-binding transcriptional activator RclR

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    320227..321081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414839.1 DNA-binding transcriptional activator RclR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414839.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2V598, A0A192CIB1, A0AA36KUP8, Q1RFN5
    Conserved Domains (2) summary
    COG2207
    Location:162 → 283
    AraC; AraC-type DNA-binding domain and AraC-containing proteins [Transcription]
    cd06995
    Location:2 → 87
    cupin_YkgD-like_N; AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin domain
Nucleotide Protein
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Gene LinkOut

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