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ompF outer membrane porin F [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945554, updated on 25-Dec-2021

Summary

Gene symbol
ompF
Gene description
outer membrane porin F
Primary source
ASAP:ABE-0003153
Locus tag
b0929
See related
ECOCYC:EG10671
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
cmlB; cry; ECK0920; nfxB; tolF
Summary
Trimeric. [More information is available at EcoGene: EG10671]. OmpF is a member of the General Bacterial Porin (GBP) family. [More information is available at EcoCyc: EG10671].
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Genomic context

Sequence:
NC_000913.3 (985894..986982, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene hydroxyacylglutathione hydrolase GloC Neighboring gene aspartate aminotransferase Neighboring gene asparagine--tRNA ligase Neighboring gene nicotinate phosphoribosyltransferase

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables colicin transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables disordered domain specific binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ion channel activity IDA
Inferred from Direct Assay
more info
PubMed 
enables lipid binding IDA
Inferred from Direct Assay
more info
PubMed 
enables lipopolysaccharide binding IDA
Inferred from Direct Assay
more info
PubMed 
enables porin activity IEA
Inferred from Electronic Annotation
more info
 
enables porin activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables porin activity TAS
Traceable Author Statement
more info
PubMed 
enables protein N-terminus binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cell outer membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell outer membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
part_of ion channel complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of pore complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of pore complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    985894..986982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415449.1 Peptide Sequence

    See identical proteins and their annotated locations for NP_415449.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P02931
    Conserved Domains (1) summary
    PRK10002
    Location:1362
    PRK10002; porin OmpF
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