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focA formate channel FocA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945513, updated on 6-May-2021

Summary

Gene symbol
focA
Gene description
formate channel FocA
Primary source
ASAP:ABE-0003073
Locus tag
b0904
See related
ECOCYC:EG11258
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0895; ycaE
Summary
FocA is a membrane protein with six TM regions. [More information is available at EcoGene: EG11258]. FocA is a putative formate transporter, possibly involved in both formate uptake and efflux. [More information is available at EcoCyc: EG11258].
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Genomic context

Sequence:
NC_000913.3 (953609..954466, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pyruvate formate-lyase activating enzyme Neighboring gene pyruvate formate-lyase Neighboring gene ribosomal protein S12 methylthiotransferase accessory factor YcaO Neighboring gene DUF421 domain-containing protein YcaP

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables formate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables formate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables formate transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables identical protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in formate transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within formate transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within formate transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mixed acid fermentation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within response to acidic pH TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of plasma membrane ISM
Inferred from Sequence Model
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    953609..954466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415424.1 formate channel FocA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415424.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0AC23
    Conserved Domains (1) summary
    PRK10805
    Location:1285
    PRK10805; formate transporter; Provisional
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