Format

Send to:

Choose Destination

rihA pyrimidine-specific ribonucleoside hydrolase RihA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945503, updated on 10-Oct-2019

Summary

Gene symbol
rihA
Gene description
pyrimidine-specific ribonucleoside hydrolase RihA
Primary source
EcoGene:EG12701
Locus tag
b0651
See related
ASAP:ABE-0002227; ECOCYC:G6358
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0644; ybeK
Summary
The rihA gene encodes a ribonucleoside hydrolase that preferentially utilizes cytidine and uridine . [More information is available at EcoCyc: G6358].

Genomic context

Sequence:
NC_000913.3 (683477..684412, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1266 domain-containing protein YbeU Neighboring gene co-chaperone DjlC Neighboring gene chaperone protein HscC Neighboring gene glutamate/aspartate ABC transporter ATP binding subunit Neighboring gene glutamate/aspartate ABC transporter membrane subunit GltK Neighboring gene glutamate/aspartate ABC transporter membrane subunit GltJ

Pathways from BioSystems

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, hydrolyzing N-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 
identical protein binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
purine nucleosidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosylpyrimidine nucleosidase activity IDA
Inferred from Direct Assay
more info
PubMed 
uridine nucleosidase activity IDA
Inferred from Direct Assay
more info
PubMed 
uridine nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
metabolic process IEA
Inferred from Electronic Annotation
more info
 
nucleobase-containing small molecule interconversion IEA
Inferred from Electronic Annotation
more info
 
protein homotetramerization IDA
Inferred from Direct Assay
more info
PubMed 
purine nucleoside catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
pyrimidine nucleobase metabolic process IEA
Inferred from Electronic Annotation
more info
 
pyrimidine ribonucleoside catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
pyrimidine-specific ribonucleoside hydrolase RihA
NP_415184.1

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    683477..684412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415184.1 pyrimidine-specific ribonucleoside hydrolase RihA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415184.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P41409
    Conserved Domains (1) summary
    PRK10443
    Location:1311
    rihA; ribonucleoside hydrolase 1; Provisional
Support Center