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ybjP DUF3828 domain-containing lipoprotein YbjP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945491, updated on 6-May-2021

Summary

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Gene symbol
ybjP
Gene description
DUF3828 domain-containing lipoprotein YbjP
Primary source
ASAP:ABE-0002941
Locus tag
b0865
See related
ECOCYC:G6450
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0856
Summary
Overexpression causes abnormal biofilm architecture and reduced motility. [More information is available at EcoGene: EG13685].
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Genomic context

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Sequence:
NC_000913.3 (903952..904467, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter periplasmic binding protein ArtI Neighboring gene L-arginine ABC transporter ATP binding subunit Neighboring gene putative heavy metal binding protein YbjQ Neighboring gene N-acetylmuramoyl-L-alanine amidase D Neighboring gene putative epimerase YbjS

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. Lacour S, et al. J Bacteriol, 2004 Nov. PMID 15489429, Free PMC Article
  2. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
  3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by GO

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF3828 domain-containing lipoprotein YbjP

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    903952..904467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415386.1 DUF3828 domain-containing lipoprotein YbjP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415386.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P75818
    Conserved Domains (1) summary
    PRK10533
    Location:1 → 171
    PRK10533; putative lipoprotein; Provisional
Nucleotide Protein
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