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ybjN [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945482, updated on 11-Sep-2024

Summary

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Official Symbol
ybjN
Primary source
ECOCYC:G6447
Locus tag
b0853
See related
ASAP:ABE-0002910
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0844
Summary
YbjN is a putative sensory transductin regulator that is thought to generally stabilize unstable proteins . [More information is available at EcoCyc: G6447].
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Genomic context

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Sequence:
NC_000913.3 (892957..893433)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1418 domain-containing protein YbjC Neighboring gene NADPH-dependent nitro/quinone reductase NfsA Neighboring gene ribosomal protein S6 modification protein Neighboring gene putrescine ABC transporter periplasmic binding protein Neighboring gene putrescine ABC transporter ATP binding subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli. Wang D, et al. PLoS One, 2011. PMID 21980417, Free PMC Article
  2. Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity. Fetrow JS, et al. J Mol Biol, 1998 Oct 2. PMID 9743619
  3. Regulation of the nfsA Gene in Escherichia coli by SoxS. Paterson ES, et al. J Bacteriol, 2002 Jan. PMID 11741843, Free PMC Article
  4. Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. Byrne RT, et al. J Bacteriol, 2014 Oct. PMID 25049088, Free PMC Article
  5. Analysis of the temperature-sensitive mutation of Escherichia coli pantothenate kinase reveals YbjN as a possible protein stabilizer. Chen X, et al. Biochem Biophys Res Commun, 2006 Jun 30. PMID 16701556

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of bacterial-type flagellum assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of bacterial-type flagellum-dependent cell motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of single-species biofilm formation on inanimate substrate IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pilus assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to ionizing radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
protein YbjN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    892957..893433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415374.1 protein YbjN [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415374.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AJP9
    Conserved Domains (1) summary
    pfam10722
    Location:9 → 131
    YbjN; Putative bacterial sensory transduction regulator
Nucleotide Protein
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