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ihfA integration host factor subunit alpha [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945472, updated on 6-May-2021

Summary

Gene symbol
ihfA
Gene description
integration host factor subunit alpha
Primary source
ASAP:ABE-0005715
Locus tag
b1712
See related
ECOCYC:EG10440
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1710; hid; himA
Summary
The protein family is HI-HN-S The initiating methionine is cleaved . [More information is available at EcoCyc: EG10440].
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Genomic context

Sequence:
NC_000913.3 (1795253..1795552, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene vitamin B12 ABC transporter ATP binding subunit Neighboring gene thioredoxin/glutathione peroxidase Neighboring gene vitamin B12 ABC transporter membrane subunit Neighboring gene phenylalanine--tRNA ligase subunit beta Neighboring gene phenylalanine--tRNA ligase subunit alpha

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription activator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription activator activity IPI
Inferred from Physical Interaction
more info
PubMed 
contributes_to sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoid IEA
Inferred from Electronic Annotation
more info
 
part_of protein-DNA complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-DNA complex IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
integration host factor subunit alpha

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1795253..1795552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416227.1 integration host factor subunit alpha [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416227.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0A6X7
    Conserved Domains (1) summary
    PRK00285
    Location:197
    ihfA; integration host factor subunit alpha; Reviewed
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