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ybiI zinc finger domain-containing protein YbiI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945434, updated on 3-Dec-2024

Summary

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Official Symbol
ybiI
Official Full Name
zinc finger domain-containing protein YbiI
Primary source
ECOCYC:EG12421
Locus tag
b0803
See related
ASAP:ABE-0002744
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0792
Summary
dksA and ybiI are paralogs. [More information is available at EcoGene: EG12421].
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Genomic context

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Sequence:
NC_000913.3 (838190..838456, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene protein YbiE Neighboring gene DUF1471 domain-containing protein YbiJ Neighboring gene PKHD-type hydroxylase YbiX Neighboring gene iron catecholate outer membrane transporter Fiu

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural analysis of the rhlE gene of Escherichia coli. Ohmori H. Jpn J Genet, 1994 Feb. PMID 8037924
  2. Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. McHugh JP, et al. J Biol Chem, 2003 Aug 8. PMID 12746439
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of secondary metabolite biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger domain-containing protein YbiI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    838190..838456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415324.1 zinc finger domain-containing protein YbiI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415324.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAP9MKS6
    Conserved Domains (1) summary
    PRK11019
    Location:1 → 88
    PRK11019; DksA/TraR family C4-type zinc finger protein
Nucleotide Protein
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