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ppdA prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945393, updated on 19-Sep-2024

Summary

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Official Symbol
ppdA
Official Full Name
prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA
Primary source
ECOCYC:EG12081
Locus tag
b2826
See related
ASAP:ABE-0009266
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2822
Summary
Overexpression causes abnormal biofilm architecture. ppdA is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006). [More information is available at EcoGene: EG12081]. A ppdAB mutant does not exhibit defects in chemotaxis or flagellar motility . [More information is available at EcoCyc: EG12081].
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Genomic context

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Sequence:
NC_000913.3 (2963707..2964177, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene exodeoxyribonuclease V subunit RecC Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC Neighboring gene DUF2509 domain-containing protein YgdB Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB Neighboring gene thymidylate synthase Neighboring gene phosphatidylglycerol--prolipoprotein diacylglyceryl transferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel sigmaF-dependent genes of Escherichia coli found using a specified promoter consensus. Park K, et al. FEMS Microbiol Lett, 2001 Aug 21. PMID 11520622
  2. Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes. Hobbs M, et al. Mol Microbiol, 1993 Oct. PMID 7934814
  3. Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region. Finch PW, et al. Nucleic Acids Res, 1986 Jun 11. PMID 3520484, Free PMC Article
  4. Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria. Cameron AD, et al. Nucleic Acids Res, 2006. PMID 17068078, Free PMC Article
  5. Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. Monsieurs P, et al. J Mol Evol, 2005 Apr. PMID 15883881

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2963707..2964177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417303.1 prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417303.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FVI3, A0A6D0IK53, A0A8S7EIC8
    Conserved Domains (1) summary
    PRK10506
    Location:1 → 156
    PRK10506; prepilin peptidase-dependent protein
Nucleotide Protein
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