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sodC superoxide dismutase (Cu-Zn) [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945343, updated on 6-May-2021

Summary

Gene symbol
sodC
Gene description
superoxide dismutase (Cu-Zn)
Primary source
ASAP:ABE-0005505
Locus tag
b1646
See related
ECOCYC:G6886
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1642
Summary
SodC is repressed anaerobically by Fnr and is induced in stationary phase by RpoS. [More information is available at EcoGene: EG13419]. SodC is a periplasmic enzyme that converts superoxide radicals to hydrogen peroxide and water. [More information is available at EcoCyc: G6886].
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Genomic context

Sequence:
NC_000913.3 (1724134..1724655, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative membrane fusion protein YdhJ Neighboring gene putative transporter YdhK Neighboring gene putative oxidoreductase YdhF Neighboring gene DUF1289 domain-containing protein YdhL

Pathways from PubChem

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables antioxidant activity IEA
Inferred from Electronic Annotation
more info
 
enables copper ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables copper ion binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables superoxide dismutase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables superoxide dismutase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within superoxide metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in periplasmic space IDA
Inferred from Direct Assay
more info
PubMed 
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
superoxide dismutase (Cu-Zn)
NP_416163.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1724134..1724655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416163.1 superoxide dismutase (Cu-Zn) [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416163.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0AGD1
    Conserved Domains (1) summary
    PRK10290
    Location:1173
    PRK10290; superoxide dismutase [Cu-Zn] SodC2
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