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ybfE ribbon-helix-helix domain-containing protein YbfE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945291, updated on 19-Sep-2024

Summary

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Official Symbol
ybfE
Official Full Name
ribbon-helix-helix domain-containing protein YbfE
Primary source
ECOCYC:EG11775
Locus tag
b0685
See related
ASAP:ABE-0002335
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0673
Summary
LexA regulon. [More information is available at EcoGene: EG11775]. Levels of ybfE mRNA are increased by exposure to the DNA damaging agent mitomycin C; the increase is dependent on LexA. [More information is available at EcoCyc: EG11775].
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Genomic context

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Sequence:
NC_000913.3 (711605..711898, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator Fur Neighboring gene RyhB-regulated fur leader peptide Neighboring gene flavodoxin 1 Neighboring gene esterase Neighboring gene negative modulator of initiation of replication

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The response of Escherichia coli to the alkylating agents chloroacetaldehyde and styrene oxide. Muenter MM, et al. Mutat Res Genet Toxicol Environ Mutagen, 2019 Apr. PMID 30857727, Free PMC Article
  2. NikR is a ribbon-helix-helix DNA-binding protein. Chivers PT, et al. Protein Sci, 1999 Nov. PMID 10595554, Free PMC Article
  3. Identification of additional genes belonging to the LexA regulon in Escherichia coli. Fernández De Henestrosa AR, et al. Mol Microbiol, 2000 Mar. PMID 10760155
  4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribbon-helix-helix domain-containing protein YbfE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    711605..711898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415211.2 ribbon-helix-helix domain-containing protein YbfE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415211.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2V5A4, A0A0H3EEL7, A0A0J2B729, A0A376TK31, A0A454A287, A0AAI9N843
    Conserved Domains (1) summary
    PRK11675
    Location:1 → 90
    PRK11675; LexA regulated protein; Provisional
Nucleotide Protein
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