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ybeD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945220, updated on 11-Sep-2024

Summary

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Official Symbol
ybeD
Primary source
ECOCYC:EG11592
Locus tag
b0631
See related
ASAP:ABE-0002162
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0624
Summary
Binds TrxA (Kumar, 2004). [More information is available at EcoGene: EG11592]. YbeD is a conserved protein of unknown function. [More information is available at EcoCyc: EG11592].
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Genomic context

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Sequence:
NC_000913.3 (662379..662642, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YbeF Neighboring gene lipoyl(octanoyl) transferase Neighboring gene D-alanyl-D-alanine carboxypeptidase DacA Neighboring gene rare lipoprotein RlpA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of YbeD in Escherichia coli Enhances Thermotolerance. Kim S, et al. J Microbiol Biotechnol, 2019 Mar 28. PMID 30939630
  2. Lipoic acid metabolism in Escherichia coli: sequencing and functional characterization of the lipA and lipB genes. Reed KE, et al. J Bacteriol, 1993 Mar. PMID 8444795, Free PMC Article
  3. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
  4. Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli. Kumar JK, et al. Proc Natl Acad Sci U S A, 2004 Mar 16. PMID 15004283, Free PMC Article
  5. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to heat IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DUF493 domain-containing protein YbeD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    662379..662642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415164.1 DUF493 domain-containing protein YbeD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415164.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376TK89
    Conserved Domains (1) summary
    PRK04998
    Location:1 → 87
    PRK04998; hypothetical protein; Provisional
Nucleotide Protein
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Gene LinkOut

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