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ybdL methionine transaminase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945211, updated on 30-Jul-2025
Official Symbol
ybdL
Official Full Name
methionine transaminase
Primary source
ECOCYC:G6329
Locus tag
b0600
See related
ASAP:ABE-0002069
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0594
Summary
AFMB Structural Genomics target Number 35 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13531]. A crystal structure of YbdL was solved at 2.35 A resolution. [More information is available at EcoCyc: G6329].
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Sequence:
NC_000913.3 (633586..634746)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF04328 family protein YbdD Neighboring gene hydroxycarboxylate dehydrogenase A Neighboring gene ParB-like nuclease domain-containing protein YbdM Neighboring gene putative PAPS reductase/DUF3440 domain-containing protein YbdN Neighboring gene DNA-binding transcriptional repressor CitR

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Transcriptional responses of Escherichia coli to S-nitrosoglutathione under defined chemostat conditions reveal major changes in methionine biosynthesis. Flatley J, et al. J Biol Chem, 2005 Mar 18. PMID 15647275
  2. Crystal structure and reactivity of YbdL from Escherichia coli identify a methionine aminotransferase function. Dolzan M, et al. FEBS Lett, 2004 Jul 30. PMID 15280032
  3. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
  4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables kynurenine-oxoglutarate transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables methionine-oxo-acid transaminase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables methionine-oxo-acid transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyridoxal phosphate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
methionine transaminase
NP_415133.1

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    633586..634746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415133.1 methionine transaminase

    See identical proteins and their annotated locations for NP_415133.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8T5ZZW2
    Conserved Domains (1) summary
    PRK09082
    Location:1 → 386
    PRK09082; methionine aminotransferase; Validated
Nucleotide Protein
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