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ygiB DUF1190 domain-containing protein YgiB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945086, updated on 6-Oct-2023

Summary

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Gene symbol
ygiB
Gene description
DUF1190 domain-containing protein YgiB
Primary source
ASAP:ABE-0009969
Locus tag
b3037
See related
ECOCYC:EG11164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3028
Summary
YgiB has a probable 35 aa type II signal peptide. [More information is available at EcoGene: EG11164]. Transcription of ygiB is induced upon biofilm formation compared to planktonic growth in both exponential and stationary phase. [More information is available at EcoCyc: EG11164].
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Genomic context

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Sequence:
NC_000913.3 (3179744..3180415)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ADP-sugar pyrophosphatase Neighboring gene outer membrane channel TolC Neighboring gene putative acid--amine ligase YgiC Neighboring gene 4,5-DOPA dioxygenase extradiol

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of a region duplicated in Escherichia coli toc mutants. Yang TP, et al. Biochim Biophys Acta, 1992 Mar 24. PMID 1314093
  2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  4. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270
  5. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cell outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DUF1190 domain-containing protein YgiB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3179744..3180415
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417509.3 DUF1190 domain-containing protein YgiB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417509.3

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A828G9J5
    Conserved Domains (1) summary
    PRK11653
    Location:1 → 223
    PRK11653; DUF1190 family protein
Nucleotide Protein
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