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yaiW [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945038, updated on 11-Sep-2024

Summary

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Official Symbol
yaiW
Primary source
ECOCYC:G6227
Locus tag
b0378
See related
ASAP:ABE-0001299
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0373
Summary
First 20 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG13608]. The yaiW gene is a member of the E regulon . [More information is available at EcoCyc: G6227].
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Genomic context

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Sequence:
NC_000913.3 (397872..398966)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidoglycan DD-carboxypeptidase/peptidoglycan DD-endopeptidase Neighboring gene peptide antibiotic/peptide nucleic acid transporter Neighboring gene DUF2755 domain-containing inner membrane protein YaiY Neighboring gene DUF2754 domain-containing protein YaiZ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enteric YaiW is a surface-exposed outer membrane lipoprotein that affects sensitivity to an antimicrobial peptide. Arnold MF, et al. J Bacteriol, 2014 Jan. PMID 24214946, Free PMC Article
  2. New members of the Escherichia coli sigmaE regulon identified by a two-plasmid system. Rezuchova B, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900013
  3. Conserved and variable functions of the sigmaE stress response in related genomes. Rhodius VA, et al. PLoS Biol, 2006 Jan. PMID 16336047, Free PMC Article
  4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  5. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Authors found that both YaiW and SbmA positively affect the uptake of proline-rich Bac7 peptides, suggesting a possible connection between their cellular functions.
    Title: Enteric YaiW is a surface-exposed outer membrane lipoprotein that affects sensitivity to an antimicrobial peptide.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within response to peptide IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in external side of cell outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
surface-exposed outer membrane lipoprotein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    397872..398966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414912.1 surface-exposed outer membrane lipoprotein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414912.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L7CAX0, A0A8S7EE70
    Conserved Domains (1) summary
    pfam07759
    Location:49 → 363
    DUF1615; Protein of unknown function (DUF1615)
Nucleotide Protein
Heading Accession and Version

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