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ykgF putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944980, updated on 19-Sep-2024

Summary

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Official Symbol
ykgF
Official Full Name
putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain
Primary source
ECOCYC:G6177
Locus tag
b0307
See related
ASAP:ABE-0001060
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0306
Summary
AFMB Structural Genomics target Number (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13583].
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Genomic context

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Sequence:
NC_000913.3 (322338..323765)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional activator RclR Neighboring gene putative lactate utilization oxidoreductase YkgE Neighboring gene DUF162 domain-containing lactate utilization protein YkgG Neighboring gene uncharacterized protein YkgH Neighboring gene choline dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
  2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  3. A widely conserved gene cluster required for lactate utilization in Bacillus subtilis and its involvement in biofilm formation. Chai Y, et al. J Bacteriol, 2009 Apr. PMID 19201793, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables L-lactate dehydrogenase activity EXP
Inferred from Experiment
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lactate catabolic process EXP
Inferred from Experiment
more info
 PubMed 
involved_in lactate metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    322338..323765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414841.1 putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414841.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7THK5
    Conserved Domains (1) summary
    TIGR00273
    Location:18 → 453
    TIGR00273; iron-sulfur cluster-binding protein
Nucleotide Protein
Heading Accession and Version

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