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sodB superoxide dismutase (Fe) [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944953, updated on 3-Dec-2024
Official Symbol
sodB
Official Full Name
superoxide dismutase (Fe)
Primary source
ECOCYC:EG10954
Locus tag
b1656
See related
ASAP:ABE-0005537
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1652
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Sequence:
NC_000913.3 (1735378..1735959)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutaredoxin 4 Neighboring gene peptidoglycan endopeptidase/peptidoglycan L,D-carboxypeptidase MepH Neighboring gene putative transporter YdhP Neighboring gene cytochrome bd-I accessory subunit CydH

Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Spectroscopic and computational study of a non-heme iron [Fe-NO]7 system: exploring the geometric and electronic structures of the nitrosyl adduct of iron superoxide dismutase. Jackson TA, et al. J Am Chem Soc, 2003 Jul 9. PMID 12837107
  2. Spectroscopic measurement of a long-predicted active site pK in iron-superoxide dismutase from Escherichia coli. Sorkin DL, et al. Biochemistry, 1997 Apr 22. PMID 9125513
  3. Superoxide and the production of oxidative DNA damage. Keyer K, et al. J Bacteriol, 1995 Dec. PMID 7592468, Free PMC Article
  4. The conserved residue tyrosine 34 is essential for maximal activity of iron-superoxide dismutase from Escherichia coli. Hunter T, et al. Biochemistry, 1997 Apr 22. PMID 9125514
  5. Iron superoxide dismutase from Escherichia coli at 3.1-A resolution: a structure unlike that of copper/zinc protein at both monomer and dimer levels. Stallings WC, et al. Proc Natl Acad Sci U S A, 1983 Jul. PMID 6346322, Free PMC Article

See all (73) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: '98 Escherichia coli SWISS-2DPAGE database update.
  2. Observed roles of RNase E and RNase III in sodB mRNA turnover.
    Title: Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.
  3. relative importance of different contributions that Tyr34 may make to substrate binding
    Title: Anion binding properties of reduced and oxidized iron-containing superoxide dismutase reveal no requirement for tyrosine 34.
Submit: New GeneRIF Correction
Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables iron ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
contributes_to superoxide dismutase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables superoxide dismutase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
  
contributes_to superoxide dismutase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within removal of superoxide radicals IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to superoxide IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to superoxide IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within superoxide metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within superoxide metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in membrane HDA PubMed 
Preferred Names
superoxide dismutase (Fe)
NP_416173.1

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1735378..1735959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416173.1 superoxide dismutase (Fe) [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416173.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1V2GDV9
    Conserved Domains (1) summary
    PRK10543
    Location:1 → 193
    PRK10543; superoxide dismutase [Fe]
Nucleotide Protein
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