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ydcK putative acyltransferase YdcK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944932, updated on 4-Apr-2024

Summary

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Gene symbol
ydcK
Gene description
putative acyltransferase YdcK
Primary source
ASAP:ABE-0004765
Locus tag
b1428
See related
ECOCYC:G6741
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1421
Summary
YdcK is is a hypothetical protein. [More information is available at EcoCyc: G6741].
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Genomic context

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Sequence:
NC_000913.3 (1499469..1500449, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glucans biosynthesis protein D Neighboring gene DUF465 domain-containing protein YdcH Neighboring gene ribosomal-protein-L12-serine N-acetyltransferase Neighboring gene tellurite resistance protein Neighboring gene tellurite methyltransferase Neighboring gene DUF3313 domain-containing lipoprotein YdcL

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative acyltransferase YdcK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1499469..1500449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415945.1 putative acyltransferase YdcK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415945.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A377DSQ2
    Conserved Domains (3) summary
    cd00208
    Location:180 → 258
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
    pfam18836
    Location:169 → 186
    B_solenoid_ydck; Beta solenoid repeat from YDCK
    cl00160
    Location:224 → 295
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
Nucleotide Protein
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