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yafW [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944929, updated on 11-Sep-2024

Summary

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Official Symbol
yafW
Primary source
ECOCYC:G6121
Locus tag
b0246
See related
ASAP:ABE-0000838
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0247
Summary
Episomal expression of ykfI causes inhibition of cell growth and decreased viability, compared to wild type , and this phenotype is suppressed by coexpression of yafW . [More information is available at EcoCyc: G6121].
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Genomic context

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Sequence:
NC_000913.3 (263690..264007, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene toxin of the YkfI-YafW toxin-antitoxin system Neighboring gene DUF987 domain-containing protein YkfH Neighboring gene RadC-like JAB domain-containing protein YkfG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  2. A novel family of Escherichia coli toxin-antitoxin gene pairs. Brown JM, et al. J Bacteriol, 2003 Nov. PMID 14594833, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in positive regulation of cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
antitoxin of the YkfI-YafW toxin-antitoxin pair

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    263690..264007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414780.1 antitoxin of the YkfI-YafW toxin-antitoxin pair [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414780.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    pfam06154
    Location:4 → 104
    CbeA_antitoxin; type IV, cytoskeleton bundling-enhancing factor A
Nucleotide Protein
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