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rnhB RNase HII [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944852, updated on 10-Oct-2019

Summary

Gene symbol
rnhB
Gene description
RNase HII
Primary source
EcoGene:EG10861
Locus tag
b0183
See related
ASAP:ABE-0000622; ECOCYC:EG10861
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0182
Summary
RNase HII cleaves RNA in RNA-DNA hybrids . [More information is available at EcoCyc: EG10861].

Genomic context

Sequence:
NC_000913.3 (204493..205089)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-hydroxy-acyl-[acyl-carrier-protein] dehydratase Neighboring gene UDP-N-acetylglucosamine acyltransferase Neighboring gene lipid A disaccharide synthase Neighboring gene DNA polymerase III subunit alpha Neighboring gene acetyl-CoA carboxyltransferase subunit alpha

Bibliography

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA-DNA hybrid ribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA-DNA hybrid ribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 
endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
manganese ion binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA replication, removal of RNA primer IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 
RNA phosphodiester bond hydrolysis, endonucleolytic IEA
Inferred from Electronic Annotation
more info
 
mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleic acid phosphodiester bond hydrolysis IEA
Inferred from Electronic Annotation
more info
 
ribonucleotide excision repair IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
ribonuclease H2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    204493..205089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414725.1 RNase HII [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414725.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P10442
    Conserved Domains (1) summary
    PRK00015
    Location:10190
    rnhB; ribonuclease HII; Validated
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