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TCVgp5 p38 capsid protein [ Turnip crinkle virus ]

Gene ID: 944390, updated on 18-Aug-2023
Gene symbol
TCVgp5
Gene description
p38 capsid protein
Locus tag
TCVgp5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Turnip crinkle virus
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; Betacarmovirus
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Location:
clone: pTCV-[103,129]
Sequence:
NC_003821.3 (2744..3799)

NC_003821.3Genomic Context describing neighboring genes Neighboring gene p28 auxiliary replication protein Neighboring gene p88 replicase Neighboring gene p8 movement protein Neighboring gene p9 movement protein

Genomic Sequence:
NC_003821.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A nuclear fraction of turnip crinkle virus capsid protein is important for elicitation of the host resistance response. Kang SH, et al. Virus Res, 2015 Dec 2. PMID 26299399, Free PMC Article
  2. A spectrum of HRT-dependent hypersensitive responses elicited by the 52 amino acid N-terminus of turnip crinkle virus capsid protein and its mutants. Kang SH, et al. Virus Res, 2015 Mar 16. PMID 25656064
  3. The capsid protein p38 of turnip crinkle virus is associated with the suppression of cucumber mosaic virus in Arabidopsis thaliana co-infected with cucumber mosaic virus and turnip crinkle virus. Chen YJ, et al. Virology, 2014 Aug. PMID 25092463
  4. The capsid protein of Turnip crinkle virus overcomes two separate defense barriers to facilitate systemic movement of the virus in Arabidopsis. Cao M, et al. J Virol, 2010 Aug. PMID 20504923, Free PMC Article
  5. Importance of coat protein and RNA silencing in satellite RNA/virus interactions. Manfre AJ, et al. Virology, 2008 Sep 15. PMID 18639914

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Together, these results uncovered a strong correlation between nuclear localization and nuclear inclusion formation by turnip crinkle virus capsid protein and induction of host hypersensitive response.
    Title: A nuclear fraction of turnip crinkle virus capsid protein is important for elicitation of the host resistance response.
  2. The N-terminal 52-amino-acid R domain of capsid protein is the elicitor of hypersensitive responses in Nicotiana benthamiana.
    Title: A spectrum of HRT-dependent hypersensitive responses elicited by the 52 amino acid N-terminus of turnip crinkle virus capsid protein and its mutants.
  3. p38-defective mutant loses the ability to repress cucumber mosaic virus, suggesting that p38 plays an important role in the antagonistic effect toward cucumber mosaic virus in Arabidopsis plants co-infected with both viruses.
    Title: The capsid protein p38 of turnip crinkle virus is associated with the suppression of cucumber mosaic virus in Arabidopsis thaliana co-infected with cucumber mosaic virus and turnip crinkle virus.
  4. Turnip crinkle virus coat protein inhibits the basal immune response in Arabidopsis by binding to the TIP protein.
    Title: Turnip crinkle virus coat protein inhibits the basal immune response to virus invasion in Arabidopsis by binding to the NAC transcription factor TIP.
  5. Turnip crinkle virus capsid protein not only allows the viral genome to access the systemic movement channel through silencing suppression but also ensures its smooth egress by way of assembled virus particles.
    Title: The capsid protein of Turnip crinkle virus overcomes two separate defense barriers to facilitate systemic movement of the virus in Arabidopsis.
  6. The paper demonstrates that a functional coat protein, but not DCL2/DCL4, is required for satC-mediated repression of turnip crinkle virus.
    Title: Importance of coat protein and RNA silencing in satellite RNA/virus interactions.
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Products Interactant Other Gene Complex Source Pubs Description

Homology

Preferred Names
p38 capsid protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003821.3 Reference assembly

    Range
    2744..3799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_620723.2 p38 capsid protein [Turnip crinkle virus]

    See identical proteins and their annotated locations for NP_620723.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P06663, Q7TD18
    UniProtKB/TrEMBL
    E7E1K6
    Conserved Domains (1) summary
    pfam00729
    Location:60 → 239
    Viral_coat; Viral coat protein (S domain)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P06663.2

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