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Sfxn4 sideroflexin 4 [ Mus musculus (house mouse) ]

Gene ID: 94281, updated on 19-Mar-2019

Summary

Official Symbol
Sfxn4provided by MGI
Official Full Name
sideroflexin 4provided by MGI
Primary source
MGI:MGI:2137680
See related
Ensembl:ENSMUSG00000063698
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in cortex adult (RPKM 2.7), cerebellum adult (RPKM 2.6) and 22 other tissues See more
Orthologs

Genomic context

See Sfxn4 in Genome Data Viewer
Location:
19; 19 D3
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (60837270..60861700, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (60913180..60937333, complement)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene microRNA 3084-2 Neighboring gene eukaryotic translation initiation factor 3, subunit A Neighboring gene small nucleolar RNA, H/ACA box 19 Neighboring gene family with sequence similarity 45, member A Neighboring gene peroxiredoxin 3 Neighboring gene G protein-coupled receptor kinase 5 Neighboring gene predicted gene, 41885

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Clone Names

  • MGC107253

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
amino acid transport IEA
Inferred from Electronic Annotation
more info
 
biological_process ND
No biological Data available
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion HDA PubMed 
mitochondrion ISA
Inferred from Sequence Alignment
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362384.1NP_001349313.1  sideroflexin-4 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102432, AC163019
    Conserved Domains (1) summary
    cl04275
    Location:1217
    Mtc; Tricarboxylate carrier
  2. NM_001362385.1NP_001349314.1  sideroflexin-4 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC102432, AC163019, AK148530
    Conserved Domains (1) summary
    cl04275
    Location:1212
    Mtc; Tricarboxylate carrier
  3. NM_053198.4NP_444428.3  sideroflexin-4 isoform 1

    See identical proteins and their annotated locations for NP_444428.3

    Status: VALIDATED

    Source sequence(s)
    AC102432, AC163019
    Consensus CDS
    CCDS29943.1
    UniProtKB/Swiss-Prot
    Q925N1
    Related
    ENSMUSP00000118743.1, ENSMUST00000135808.7
    Conserved Domains (1) summary
    pfam03820
    Location:15312
    Mtc; Tricarboxylate carrier

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

    Range
    60837270..60861700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527499.3XP_006527562.1  sideroflexin-4 isoform X2

    Conserved Domains (1) summary
    cl04275
    Location:1212
    Mtc; Tricarboxylate carrier
  2. XM_011247409.2XP_011245711.1  sideroflexin-4 isoform X1

    Conserved Domains (1) summary
    cl04275
    Location:1217
    Mtc; Tricarboxylate carrier
  3. XM_006527498.3XP_006527561.1  sideroflexin-4 isoform X1

    See identical proteins and their annotated locations for XP_006527561.1

    Conserved Domains (1) summary
    cl04275
    Location:1217
    Mtc; Tricarboxylate carrier
  4. XM_011247410.2XP_011245712.1  sideroflexin-4 isoform X3

    Conserved Domains (1) summary
    cl04275
    Location:38177
    Mtc; Tricarboxylate carrier

RNA

  1. XR_001782624.1 RNA Sequence

  2. XR_386528.2 RNA Sequence

  3. XR_386527.2 RNA Sequence

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