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Atp5pf ATP synthase peripheral stalk subunit F6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 94271, updated on 3-Feb-2019

Summary

Official Symbol
Atp5pfprovided by RGD
Official Full Name
ATP synthase peripheral stalk subunit F6provided by RGD
Primary source
RGD:621376
See related
Ensembl:ENSRNOG00000001551
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Atp5j
Summary
coupling factor 6 of the mitochondrial ATP synthase complex [RGD, Feb 2006]
Expression
Biased expression in Heart (RPKM 560.0), Muscle (RPKM 333.2) and 9 other tissues See more
Orthologs

Genomic context

See Atp5pf in Genome Data Viewer
Location:
11q11
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (24286806..24294419, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (27914805..27918237, complement)

Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene uncharacterized LOC102551946 Neighboring gene junctional adhesion molecule 2 Neighboring gene GA binding protein transcription factor subunit alpha Neighboring gene amyloid beta precursor protein Neighboring gene cysteine and tyrosine rich 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
contributes_to ATPase activity IDA
Inferred from Direct Assay
more info
PubMed 
contributes_to ATPase activity ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex binding IDA
Inferred from Direct Assay
more info
PubMed 
proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell surface IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial proton-transporting ATP synthase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial proton-transporting ATP synthase complex IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial proton-transporting ATP synthase complex ISO
Inferred from Sequence Orthology
more info
 
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ATP synthase-coupling factor 6, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
ATPase subunit F6
coupling factor 6
NP_446054.1
XP_008766824.1
XP_008766825.1
XP_017453574.1
XP_017453575.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053602.2NP_446054.1  ATP synthase-coupling factor 6, mitochondrial precursor

    See identical proteins and their annotated locations for NP_446054.1

    Status: PROVISIONAL

    Source sequence(s)
    X54510
    UniProtKB/Swiss-Prot
    P21571
    Related
    ENSRNOP00000002116.2, ENSRNOT00000002116.4
    Conserved Domains (1) summary
    pfam05511
    Location:196
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

    Range
    24286806..24294419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598085.1XP_017453574.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    P21571
    Conserved Domains (1) summary
    pfam05511
    Location:196
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  2. XM_017598086.1XP_017453575.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    P21571
    Conserved Domains (1) summary
    pfam05511
    Location:196
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  3. XM_008768603.1XP_008766825.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_008766825.1

    UniProtKB/Swiss-Prot
    P21571
    Conserved Domains (1) summary
    pfam05511
    Location:196
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  4. XM_008768602.2XP_008766824.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_008766824.1

    UniProtKB/Swiss-Prot
    P21571
    Conserved Domains (1) summary
    pfam05511
    Location:196
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

Alternate Rn_Celera

Genomic

  1. AC_000079.1 Alternate Rn_Celera

    Range
    23720789..23727843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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