Format

Send to:

Choose Destination

Hbg1 hemoglobin subunit gamma 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 94164, updated on 2-Oct-2018

Summary

Official Symbol
Hbg1provided by RGD
Official Full Name
hemoglobin subunit gamma 1provided by RGD
Primary source
RGD:620306
See related
Ensembl:ENSRNOG00000030879
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hbe1; Glnb2; Hbb-y
Summary
member of the hemoglobin family [RGD, Feb 2006]
Expression
Low expression observed in reference dataset See more

Genomic context

See Hbg1 in Genome Data Viewer
Location:
1q32
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (168992841..168994219, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (175156244..175157622, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene hemoglobin subunit beta Neighboring gene similar to Hemoglobin epsilon subunit (Hemoglobin epsilon chain) (Epsilon-globin) Neighboring gene hemoglobin, epsilon 2 Neighboring gene hemoglobin subunit epsilon 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
contributes_to haptoglobin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
heme binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
heme binding IDA
Inferred from Direct Assay
more info
PubMed 
hemoglobin alpha binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
hemoglobin alpha binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
organic acid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxygen binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxygen carrier activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to peroxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cellular oxidant detoxification IEA
Inferred from Electronic Annotation
more info
 
hydrogen peroxide catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
oxygen transport IEA
Inferred from Electronic Annotation
more info
 
protein heterooligomerization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein heterooligomerization IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
haptoglobin-hemoglobin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
hemoglobin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
hemoglobin complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
hemoglobin subunit gamma 1
Names
epsilon 3 globin
globin b2
hemoglobin Y, beta-like embryonic chain
hemoglobin, epsilon 1
hemoglobin, gamma A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172093.1NP_742090.1  hemoglobin subunit gamma 1

    See identical proteins and their annotated locations for NP_742090.1

    Status: PROVISIONAL

    Source sequence(s)
    X56328
    UniProtKB/TrEMBL
    O88754
    Related
    ENSRNOP00000043418.2, ENSRNOT00000039946.4
    Conserved Domains (1) summary
    cd08925
    Location:7146
    Hb-beta_like; Hemoglobin beta, gamma, delta, epsilon, and related Hb subunits

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    168992841..168994219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    156282798..156284176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center