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Hbg1 hemoglobin subunit gamma 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 94164, updated on 6-May-2021

Summary

Official Symbol
Hbg1provided by RGD
Official Full Name
hemoglobin subunit gamma 1provided by RGD
Primary source
RGD:620306
See related
Ensembl:ENSRNOG00000030879
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hbe1; Glnb2; Hbb-y
Summary
member of the hemoglobin family [RGD, Feb 2006]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Hbg1 in Genome Data Viewer
Location:
1q32
Exon count:
3
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (158271993..158273371, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (168992841..168994219, complement)

Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene hemoglobin subunit epsilon-like Neighboring gene hemoglobin subunit beta Neighboring gene hemoglobin, epsilon 2 Neighboring gene hemoglobin subunit epsilon 1 Neighboring gene olfactory receptor 129

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
contributes_to haptoglobin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables heme binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables heme binding IDA
Inferred from Direct Assay
more info
PubMed 
enables hemoglobin alpha binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables hemoglobin alpha binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables organic acid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables oxygen binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables oxygen carrier activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to peroxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein-containing complex binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in cellular oxidant detoxification IEA
Inferred from Electronic Annotation
more info
 
involved_in hydrogen peroxide catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in oxygen transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of haptoglobin-hemoglobin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of hemoglobin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of hemoglobin complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
hemoglobin subunit gamma 1
Names
epsilon 3 globin
globin b2
hemoglobin Y, beta-like embryonic chain
hemoglobin, epsilon 1
hemoglobin, gamma A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172093.1NP_742090.1  hemoglobin subunit gamma 1

    See identical proteins and their annotated locations for NP_742090.1

    Status: PROVISIONAL

    Source sequence(s)
    X56328
    UniProtKB/TrEMBL
    O88754
    Related
    ENSRNOP00000043418.2, ENSRNOT00000039946.4
    Conserved Domains (1) summary
    cd08925
    Location:8146
    Hb-beta-like; Hemoglobin beta, gamma, delta, epsilon, and related Hb subunits

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

    Range
    158271993..158273371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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