U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LMVgp1 polyprotein [ Lettuce mosaic virus ]

Gene ID: 940180, updated on 18-Aug-2023

Summary

Go to the top of the page Help
Gene symbol
LMVgp1
Gene description
polyprotein
Locus tag
LMVgp1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Lettuce mosaic virus (strain: E)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_003605.1 (104..9871)

NC_003605.1Genomic Context describing neighboring genes Neighboring gene PIPO

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003605.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E. Tavert-Roudet G, et al. J Gen Virol, 2012 Jan. PMID 21918009
  2. Central domain of a potyvirus VPg is involved in the interaction with the host translation initiation factor eIF4E and the viral protein HcPro. Roudet-Tavert G, et al. J Gen Virol, 2007 Mar. PMID 17325377
  3. Comparison of the complete nucleotide sequences of two isolates of lettuce mosaic virus differing in their biological properties. Revers F, et al. Virus Res, 1997 Feb. PMID 9085548

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with lettuce eIF4E.
    Title: The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E.
  2. interactions between the VPg and HcPro of were demonstrated in vitro
    Title: Central domain of a potyvirus VPg is involved in the interaction with the host translation initiation factor eIF4E and the viral protein HcPro.
Submit: New GeneRIF Correction

General protein information

Go to the top of the page Help
Preferred Names
polyprotein
Names
P1 protein
HC-Pro protein
P3 protein
6K1 protein
CI protein
6K2 protein
NIa-VPg protein
NIa-Pro protein
NIb protein
coat protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003605.1 Reference assembly

    Range
    104..9871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_619667.1 polyprotein [Lettuce mosaic virus]

    See identical proteins and their annotated locations for NP_619667.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P31999, P89876, P90263
    Conserved Domains (10) summary
    smart00487
    Location:1395 → 1546
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:1404 → 1531
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam01577
    Location:179 → 436
    Peptidase_S30; Potyvirus P1 protease
    pfam00271
    Location:1572 → 1685
    Helicase_C; Helicase conserved C-terminal domain
    pfam00767
    Location:3020 → 3252
    Poty_coat; Potyvirus coat protein
    pfam00851
    Location:462 → 895
    Peptidase_C6; Helper component proteinase
    pfam00863
    Location:2213 → 2446
    Peptidase_C4; Peptidase family C4
    pfam08440
    Location:1710 → 1991
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:938 → 1376
    Potyvirid-P3; Protein P3 of Potyviral polyprotein
    cl02808
    Location:2475 → 2942
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  2. NP_734153.1 P1 protein

    Conserved Domains (1) summary
    pfam01577
    Location:179 → 436
    Peptidase_S30; Potyvirus P1 protease

  3. NP_734154.1 HC-Pro protein

    UniProtKB/TrEMBL
    A0A0A7MEK5
    Conserved Domains (1) summary
    pfam00851
    Location:25 → 458
    Peptidase_C6; Helper component proteinase

  4. NP_734155.1 P3 protein

    Conserved Domains (1) summary
    pfam13608
    Location:43 → 298
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  5. NP_734156.1 6K1 protein

    Conserved Domains (1) summary
    pfam13608
    Location:1 → 52
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  6. NP_734157.1 CI protein

    Conserved Domains (5) summary
    smart00487
    Location:70 → 221
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:79 → 206
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:247 → 360
    Helicase_C; Helicase conserved C-terminal domain
    pfam08440
    Location:385 → 643
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:1 → 51
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  7. NP_734158.1 6K2 protein

  8. NP_734159.1 NIa-VPg protein

  9. NP_734160.1 NIa-Pro protein

    Conserved Domains (1) summary
    pfam00863
    Location:1 → 232
    Peptidase_C4; Peptidase family C4

  10. NP_734161.1 NIb protein

    Conserved Domains (1) summary
    cl02808
    Location:18 → 485
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  11. NP_734162.1 coat protein

    UniProtKB/TrEMBL
    A0A1W6AXU6, A0A1W6AXV7, A0A1W6AXV8, A0A1W6AXW4, A0A1W6AXW6, A0A1W6AXX7, A0A1W6AXX8, A0A1W6AXY0, A0A1W6AXY1, A0A1W6AXY3, A0A1W6AXZ5, A0A1W6AXZ6, A0A1W6AY00, A0A1W6AY01
    Conserved Domains (1) summary
    pfam00767
    Location:43 → 275
    Poty_coat; Potyvirus coat protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.