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cheD sequence specific deamidase required for methylation of methyl-accepting chemotaxis proteins (MCPs) by CheR [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939959, updated on 12-Feb-2021

Summary

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Gene symbol
cheD
Gene description
sequence specific deamidase required for methylation of methyl-accepting chemotaxis proteins (MCPs) by CheR
Locus tag
BSU_16460
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU16460
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Genomic context

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Sequence:
NC_000964.3 (1715970..1716470)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene chemotactic two-component sensor histidine kinase Neighboring gene modulation of CheA activity in response to attractants (chemotaxis) Neighboring gene signal terminating phosphatase of CheR-mediated methylation of methyl-accepting chemotaxis proteins (MCPs) Neighboring gene RNA polymerase sigma-28 factor (sigma-D) Neighboring gene coupling factor for flagellin transcription and translation

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elucidation of the multiple roles of CheD in Bacillus subtilis chemotaxis. Glekas GD, et al. Mol Microbiol, 2012 Nov. PMID 22931217, Free PMC Article
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CheD binds and activates the CheC/CheD/CheYp chemoreceptors.
    Title: Elucidation of the multiple roles of CheD in Bacillus subtilis chemotaxis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
sequence specific deamidase required for methylation of methyl-accepting chemotaxis proteins (MCPs) by CheR
NP_389528.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 15546616, 16469702, 22720735, 23226535; Product type cp: cell process

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389528.1 sequence specific deamidase required for methylation of methyl-accepting chemotaxis proteins (MCPs) by CheR [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389528.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    COG1871
    Location:1 → 166
    CheD; Chemotaxis receptor (MCP) glutamine deamidase CheD [Cell motility, Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P40404.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases