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conD ICEBs1 mobile element: subunit of the conjugation machinery [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939921, updated on 12-Feb-2021

Summary

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Gene symbol
conD
Gene description
ICEBs1 mobile element: subunit of the conjugation machinery
Locus tag
BSU_04930
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU04930
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Genomic context

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Sequence:
NC_000964.3 (538322..538846)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene ICEBs1 mobile element: conserved protein of unknown function Neighboring gene ICEBs1 mobile element: subunit of the conjugation machinery VirB8 Neighboring gene ICEBs1 mobile element: subunit of the conjugation machinery Neighboring gene ICEBs1 mobile element: VirB4-like ATPase Neighboring gene ICEBs1 mobile element: conserved protein of unknown function Neighboring gene ICEBs1 mobile element: VirB6 subunit of the conjugation machinery Neighboring gene ICEBs1 mobile element: two-domain autolysin with N-acetylmuramidase and DL-endopeptidase activity VirB1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ICEBs1 mobile element: subunit of the conjugation machinery
NP_388374.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 22505685, 26013486; Product type h: extrachromosomal origin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388374.1 ICEBs1 mobile element: subunit of the conjugation machinery [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388374.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P96641
    Conserved Domains (1) summary
    pfam12648
    Location:7 → 113
    TcpE; TcpE family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P96641.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials