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ydeF putative PLP-dependent transcriptional regulator [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939911, updated on 4-Apr-2024

Summary

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Gene symbol
ydeF
Gene description
putative PLP-dependent transcriptional regulator
Locus tag
BSU_05180
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU05180
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Genomic context

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Sequence:
NC_000964.3 (564713..566101)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative permease Neighboring gene putative transcriptional regulator (AraC/XylS family) Neighboring gene putative permease Neighboring gene putative integral inner membrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative PLP-dependent transcriptional regulator
NP_388399.2
  • Evidence 3: Putative function from multiple computational evidences; PubMedId: 15223311, 28348215; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388399.2 putative PLP-dependent transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4G5K9
    Conserved Domains (1) summary
    COG1167
    Location:23 → 461
    ARO8; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P96663.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases