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xkdA phage PBSX; putative peptidase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939838, updated on 3-Apr-2021

Summary

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Gene symbol
xkdA
Gene description
phage PBSX; putative peptidase
Locus tag
BSU_12500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU12500
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Genomic context

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Sequence:
NC_000964.3 (1320570..1321166, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene phage PBSX; gamma-polyglutamate hydrolase Neighboring gene phage PBSX; manganese-containing peroxidase Neighboring gene phage PBSX transcriptional regulator Neighboring gene phage PBSX; conserved hypothetical protein Neighboring gene phage PBSX; conserved hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
phage PBSX; putative peptidase
NP_389132.3
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 8760915, 16267290, 22933559; Product type h: extrachromosomal origin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    1320570..1321166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389132.3 phage PBSX; putative peptidase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389132.3

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P39780
    Conserved Domains (1) summary
    pfam06114
    Location:33 → 147
    Peptidase_M78; IrrE N-terminal-like domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P39780.4

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases