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yobO putative phage-related pre-neck appendage protein; defective prophage 6 [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939627, updated on 12-Feb-2021

Summary

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Gene symbol
yobO
Gene description
putative phage-related pre-neck appendage protein; defective prophage 6
Locus tag
BSU_19030
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU19030
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Genomic context

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Sequence:
NC_000964.3 (2076206..2078626)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative phage protein; putative defective prophage 6 Neighboring gene putative amine oxidase (flavoprotein) Neighboring gene miscRNA Neighboring gene molecular chaperone for secreting proteins

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative phage-related pre-neck appendage protein; defective prophage 6
NP_389784.1
  • Evidence 3: Putative function from multiple computational evidences; PubMedId: 11562162, 19450535; Product type h: extrachromosomal origin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389784.1 putative phage-related pre-neck appendage protein; defective prophage 6 [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389784.1

    Status: PROVISIONAL

    Conserved Domains (2) summary
    pfam11962
    Location:592 → 806
    Peptidase_G2; IMC autoproteolytic cleavage domain
    pfam12708
    Location:82 → 303
    Pectate_lyase_3; Pectate lyase superfamily protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O34433.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases