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spdL factor for peptide SdpC immunity [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939228, updated on 6-Jun-2024

Summary

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Gene symbol
spdL
Gene description
factor for peptide SdpC immunity
Locus tag
BSU_08580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU08580
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Genomic context

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Sequence:
NC_000964.3 (929406..929738)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene stress induced epoxide hydrolase Neighboring gene putative bactoprenol glycosyl transferase, phage origin Neighboring gene hypothetical protein Neighboring gene putative membrane hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
factor for peptide SdpC immunity
NP_388738.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 16629676, 22720735; Product type f: factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388738.1 factor for peptide SdpC immunity [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388738.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4G6M1
    Conserved Domains (1) summary
    COG5658
    Location:1 → 110
    COG5658; Uncharacterized membrane protein [Function unknown]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O31580.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases